Parental gene:

TUBA1A, ENSECAG00000013798

Aliases:LOC100051840, TUBA1A
Description:tubulin, alpha 1a [Source:HGNC Symbol;Acc:20766]
Organism:Horse (Equus caballus)
Coordinates:6:66956858..66961071(-)


>ENSECAG00000013798
ATGCGTGAGTGCATCTCCATCCACGTTGGGCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACACGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACCGGCGCTGGCAAGCACGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACGGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGGCA
CTACACCATTGGCAAGGAGATCATCGACCTCGTCTTGGACCGAATTCGCAAACTGGCCGACCAGTGCACAGGTCTTCAGG
GCTTCCTGGTTTTCCACAGCTTTGGGGGAGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATTGAGCGCCCAACCTACACTAACCTGAATAGGTTGATAGGTCAAATTGTGTCCTCCATCACTGCT
TCCCTCAGATTTGATGGAGCCCTCAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCCGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGTTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGATTGGTG
CCCCACTGGCTTCAAAGTTGGCATTAATTACCAGCCTCCCACTGTGGTCCCTGGTGGAGACCTGGCCAAAGTACAGCGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTACACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTCGGTGTGGATTCTGTTGAAGGAGAGGGTGAGGAAGAAGGAGAGGAATACTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 44 .75 RPM
SRP021940_embryo 279 .10 RPM
SRP021940_cerebellum 0 .05 RPM
SRP021940_testis 26 .66 RPM
SRP021940_placental_villous 53 .16 RPM
SRP021940_articular_cartilage 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001489 ortholog_one2one 3 retrogenes
retro_btau_251, retro_btau_350, retro_btau_929,
Callithrix jacchus ENSCJAG00000020894 ortholog_one2one 2 retrogenes
retro_cjac_1209, retro_cjac_3157,
Dasypus novemcinctus ENSDNOG00000004121 ortholog_one2one 1 retrogene
retro_dnov_43,
Equus caballus ENSECAG00000009504 within_species_paralog 1 retrogene
retro_ecab_1041,
Equus caballus ENSECAG00000014403 within_species_paralog 1 retrogene
retro_ecab_318,
Equus caballus ENSECAG00000014631 other_paralog 1 retrogene
retro_ecab_147,
Homo sapiens ENSG00000167552 ortholog_one2one 1 retrogene
retro_hsap_3313,
Nomascus leucogenys ENSNLEG00000017836 ortholog_one2many 2 retrogenes
retro_nleu_245, retro_nleu_2757,
Oryctolagus cuniculus ENSOCUG00000027812 ortholog_one2one 1 retrogene
retro_ocun_197,
Pteropus vampyrus ENSPVAG00000004645 ortholog_one2one 2 retrogenes
retro_pvam_1283, retro_pvam_414,
Rattus norvegicus ENSRNOG00000004559 ortholog_one2one 3 retrogenes
retro_rnor_1200, retro_rnor_2006, retro_rnor_446,
Vicugna pacos ENSVPAG00000005749 ortholog_one2one 4 retrogenes
retro_vpac_157, retro_vpac_210, retro_vpac_429, retro_vpac_72,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_223 82.34 95.79
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Download FASTA sequences of all ENSECAG00000013798 retrocopies