Parental gene:

Tuba1c, ENSRNOG00000015544

Aliases:None
Description:Tubulin alpha-1C chain [Source:UniProtKB/Swiss-Prot;Acc:Q6AYZ1]
Organism:Rat (Rattus norvegicus)
Coordinates:2:218679907..218687509(+)


>ENSRNOG00000015544
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCTGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACAGGAGCTGGCAAGCACGTGCCCCGGGCGGTGTTCGTAGACCTGGAACCCACAGTTATTGATGAAGTTCGAACT
GGCACCTACCGCCAGCTCTTCCACCCAGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGCCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACAGAATTCGCAAGCTGGCTGACCAGTGCACGGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGCTCTGGGTTCACCTCCCTGCTGATGGAGAGGCTCTCTGTCGAC
TACGGAAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACTGCTGTGGTTGAGCCCTACAATTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCAACCTACACTAACCTTAACCGCCTTATTAGCCAGATTGTGTCTTCCATCACTGCT
TCCCTCAGATTTGATGGGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCTCGAATCCACTT
CCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAACTTACAGTAGCAGAGATCACCAATG
CCTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGCTGTACCGT
GGTGATGTGGTCCCCAAGGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCCTCCCACTGTGGTACCTGGTGGCGACCTGGCCAGGGTGCAGAGAG
CTGTGTGTATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGATCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGCATGGAGGAGGGGGAGTTCTCTGAGGCCCGTGAGGATATGGCTGC
CCTAGAGAAGGATTATGAGGAGGTTGGGGCAGATAGTGCTGAAGGAGACGATGAGGGTGAAGAATATTAA

Library Parental gene expression (RPM)
SRP017611_brain 29 .84 RPM
SRP017611_kidney 78 .51 RPM
SRP017611_liver 32 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039992 ortholog_one2many 1 retrogene
retro_btau_840,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Equus caballus ENSECAG00000009504 ortholog_one2one 1 retrogene
retro_ecab_1041,
Felis catus ENSFCAG00000024852 possible_ortholog 1 retrogene
retro_fcat_361,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Mus musculus ENSMUSG00000043091 ortholog_one2one 1 retrogene
retro_mmus_843,
Oryctolagus cuniculus ENSOCUG00000028032 possible_ortholog 1 retrogene
retro_ocun_111,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Rattus norvegicus ENSRNOG00000003597 within_species_paralog 1 retrogene
retro_rnor_2819,
Rattus norvegicus ENSRNOG00000004559 within_species_paralog 3 retrogenes
retro_rnor_1200, retro_rnor_2006, retro_rnor_446,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_960 86.22 100.00
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2. retro_rnor_1193 81.42 80.85
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3. retro_rnor_2260 83.07 69.71
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Download FASTA sequences of all ENSRNOG00000015544 retrocopies