Parental gene: | Tuba1c, ENSRNOG00000015544 |
| Aliases: | None |
| Description: | Tubulin alpha-1C chain [Source:UniProtKB/Swiss-Prot;Acc:Q6AYZ1] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 2:218679907..218687509(+) |
>ENSRNOG00000015544
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCTGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACAGGAGCTGGCAAGCACGTGCCCCGGGCGGTGTTCGTAGACCTGGAACCCACAGTTATTGATGAAGTTCGAACT
GGCACCTACCGCCAGCTCTTCCACCCAGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGCCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACAGAATTCGCAAGCTGGCTGACCAGTGCACGGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGCTCTGGGTTCACCTCCCTGCTGATGGAGAGGCTCTCTGTCGAC
TACGGAAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACTGCTGTGGTTGAGCCCTACAATTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCAACCTACACTAACCTTAACCGCCTTATTAGCCAGATTGTGTCTTCCATCACTGCT
TCCCTCAGATTTGATGGGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCTCGAATCCACTT
CCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAACTTACAGTAGCAGAGATCACCAATG
CCTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGCTGTACCGT
GGTGATGTGGTCCCCAAGGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCCTCCCACTGTGGTACCTGGTGGCGACCTGGCCAGGGTGCAGAGAG
CTGTGTGTATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGATCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGCATGGAGGAGGGGGAGTTCTCTGAGGCCCGTGAGGATATGGCTGC
CCTAGAGAAGGATTATGAGGAGGTTGGGGCAGATAGTGCTGAAGGAGACGATGAGGGTGAAGAATATTAA
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCTGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACAGGAGCTGGCAAGCACGTGCCCCGGGCGGTGTTCGTAGACCTGGAACCCACAGTTATTGATGAAGTTCGAACT
GGCACCTACCGCCAGCTCTTCCACCCAGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGCCA
CTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACAGAATTCGCAAGCTGGCTGACCAGTGCACGGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGCTCTGGGTTCACCTCCCTGCTGATGGAGAGGCTCTCTGTCGAC
TACGGAAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACTGCTGTGGTTGAGCCCTACAATTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCAACCTACACTAACCTTAACCGCCTTATTAGCCAGATTGTGTCTTCCATCACTGCT
TCCCTCAGATTTGATGGGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTACCCTCGAATCCACTT
CCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAACTTACAGTAGCAGAGATCACCAATG
CCTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGCTGTACCGT
GGTGATGTGGTCCCCAAGGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCCTCCCACTGTGGTACCTGGTGGCGACCTGGCCAGGGTGCAGAGAG
CTGTGTGTATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGATCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGCATGGAGGAGGGGGAGTTCTCTGAGGCCCGTGAGGATATGGCTGC
CCTAGAGAAGGATTATGAGGAGGTTGGGGCAGATAGTGCTGAAGGAGACGATGAGGGTGAAGAATATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 32 .81 RPM |
| SRP017611_kidney | 78 .51 RPM |
| SRP017611_brain | 29 .84 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000039992 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000008444 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000009504 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000024852 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000028689 | possible_ortholog | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000010779 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000043091 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000028032 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000009435 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000003597 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004559 | within_species_paralog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_960 | 86.22 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1193 | 81.42 | 80.85 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2260 | 83.07 | 69.71 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000015544 retrocopies