RetrogeneDB ID: | retro_ecab_1087 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:93294181..93294488(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSECAG00000023672 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 71.84 % |
Parental protein coverage: | 56.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK |
T....TEFV.V.VDSTDRERISVT.EE.YKMLA.E.LR.AGLLIFA.K.D.KEC.T.AE.SQFL.LTSIK | |
Retrocopy | TFTLLTEFVTVAVDSTDRERISVTGEEFYKMLARENLREAGLLIFADK*DAKECLTIAEVSQFLELTSIK |
Parental | DHQWHIQA-CCA-LTGEGLCQGLEWMMSRLKIR |
D.Q.HIQA..C..LT.EGLCQGLEWM.SR..I. | |
Retrocopy | DPQ*HIQA>ACSVLTSEGLCQGLEWMISRREIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 4 .37 RPM |
SRP021940_cerebellum | 0 .00 RPM | 6 .60 RPM |
SRP021940_embryo | 0 .00 RPM | 15 .29 RPM |
SRP021940_placental_villous | 0 .00 RPM | 10 .15 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 8 .04 RPM |
SRP021940_testis | 0 .00 RPM | 1 .41 RPM |