RetrogeneDB ID: | retro_eeur_642 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_372960:45697..45958(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSEEUG00000009350 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 83.91 % |
Parental protein coverage: | 53.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL |
...TDRERISVTREELYKMLAHEDLRK.GLLIFANKQDVKECM.VAEIS.FLKLTSIKDHQWHIQACCAL | |
Retrocopy | IHNTDRERISVTREELYKMLAHEDLRKVGLLIFANKQDVKECMAVAEISRFLKLTSIKDHQWHIQACCAL |
Parental | TGEGVCEGLGGMMARLE |
TGE..C.GL..M..RL. | |
Retrocopy | TGEELCQGLEWMVSRLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 11 .28 RPM |
SRP017611_kidney | 0 .56 RPM | 16 .13 RPM |
SRP017611_liver | 0 .80 RPM | 19 .45 RPM |