RetrogeneDB ID: | retro_cjac_1054 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:86160013..86160361(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000003311 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.82 % |
Parental protein coverage: | 83.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | FLMWDIGGQES-LRSSWNTYYTNTEFV-IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV |
F.M.D.GGQES.L.SSWNTY.TNTE.V.I.VV.STDR.RISVTR..LYKMLAH.DLRKAGLLIFANK.DV | |
Retrocopy | FPMCDVGGQES<LHSSWNTYHTNTESV<ILVVNSTDRKRISVTRK-LYKMLAHQDLRKAGLLIFANKRDV |
Parental | KECMTVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWMMSRLKIR |
KEC.TVAEISQF.KLTSIKDHQW..IQACC.LTGEGLCQGLEWMMSR.KI. | |
Retrocopy | KECITVAEISQFVKLTSIKDHQW<GIQACCSLTGEGLCQGLEWMMSRIKIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .09 RPM | 33 .99 RPM |
SRP051959_heart | 0 .07 RPM | 52 .02 RPM |
SRP051959_kidney | 0 .09 RPM | 37 .78 RPM |
SRP051959_liver | 0 .00 RPM | 29 .33 RPM |
SRP051959_lung | 0 .02 RPM | 52 .66 RPM |
SRP051959_lymph_node | 0 .00 RPM | 33 .06 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 35 .25 RPM |
SRP051959_spleen | 0 .08 RPM | 44 .58 RPM |