Parental gene:

ARL5A, ENSDNOG00000013331

Aliases:None
Description:ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_7423:497397..520254(-)


>ENSDNOG00000013331
ATGGGAATTCTCTTCACCAGGATATGGAGACTGTTCAATCACCAGGAGCACAAAGTTATCATTGTTGGGCTGGATAATGC
AGGGAAAACTACCATCCTTTANNNNNNTTCTATGAATGAAGTTGTACACACATCCCCTACAATAGGAAGTAATGTAGAAG
AAATAGTGGTTAATAATACACGTTTCCTTATGTGGGATATTGGTGGCCAAGAATCTCTCCGTTCTTCCTGGAATACTTAC
TATACTAACACTGAGTTTGTAATAGTTGTTGTGGACAGTACAGACAGAGAAAGGATTTCTGTAACTAGAGAAGAACTGTA
TAAAATGTTGGCGCATGAGGACCTGAGAAAAGCTGGTTTGCTGATTTTTGCTAATAAGCAAGATGTTAAAGAATGTATGA
CTGTAGCAGAAATCTCCCAGTTTTTGAAACTAACTTCTATTAAGGATCATCAATGGCATATCCAAGCATGCTGTGCTCTT
ACTGGCGAGGGATTGTGCCAAGGACTTGAATGGATGATGTCACGACTTAAGATTAGATGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 15 .56 RPM
SRP012922_cerebellum 6 .60 RPM
SRP012922_heart 5 .34 RPM
SRP012922_kidney 6 .57 RPM
SRP012922_liver 4 .18 RPM
SRP012922_lung 10 .39 RPM
SRP012922_quadricep_muscle 10 .73 RPM
SRP012922_spleen 13 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005062 ortholog_one2one 25 retrogenes
retro_chof_1109, retro_chof_1132, retro_chof_1205, retro_chof_1218, retro_chof_1407, retro_chof_1414, retro_chof_1443, retro_chof_1573, retro_chof_1712, retro_chof_1953, retro_chof_206, retro_chof_2081, retro_chof_2131, retro_chof_2142, retro_chof_2433, retro_chof_2464, retro_chof_2470, retro_chof_2713, retro_chof_373, retro_chof_547, retro_chof_836, retro_chof_857, retro_chof_865, retro_chof_972, retro_chof_98,
Callithrix jacchus ENSCJAG00000003311 ortholog_one2many 9 retrogenes
retro_cjac_1054, retro_cjac_1111, retro_cjac_1255, retro_cjac_1921, retro_cjac_2949, retro_cjac_3920, retro_cjac_4131, retro_cjac_4175, retro_cjac_4211,
Cavia porcellus ENSCPOG00000005209 ortholog_one2one 1 retrogene
retro_cpor_913,
Equus caballus ENSECAG00000023672 ortholog_one2one 1 retrogene
retro_ecab_1087,
Erinaceus europaeus ENSEEUG00000009350 ortholog_one2one 3 retrogenes
retro_eeur_240, retro_eeur_642, retro_eeur_699,
Felis catus ENSFCAG00000014742 ortholog_one2many 2 retrogenes
retro_fcat_569, retro_fcat_65,
Homo sapiens ENSG00000162980 ortholog_one2one 5 retrogenes
retro_hsap_2549, retro_hsap_4715, retro_hsap_4768, retro_hsap_4894, retro_hsap_721,
Gorilla gorilla ENSGGOG00000002066 ortholog_one2one 5 retrogenes
retro_ggor_1131, retro_ggor_1594, retro_ggor_2930, retro_ggor_2971, retro_ggor_3056,
Loxodonta africana ENSLAFG00000032104 ortholog_one2one 4 retrogenes
retro_lafr_1178, retro_lafr_1228, retro_lafr_1244, retro_lafr_599,
Microcebus murinus ENSMICG00000015788 ortholog_one2one 7 retrogenes
retro_mmur_1271, retro_mmur_1487, retro_mmur_1586, retro_mmur_1618, retro_mmur_468, retro_mmur_652, retro_mmur_923,
Macaca mulatta ENSMMUG00000010521 ortholog_one2one 5 retrogenes
retro_mmul_2519, retro_mmul_2543, retro_mmul_2630, retro_mmul_616, retro_mmul_641,
Monodelphis domestica ENSMODG00000003978 ortholog_one2many 1 retrogene
retro_mdom_75,
Mustela putorius furo ENSMPUG00000000396 ortholog_one2one 2 retrogenes
retro_mputfur_1477, retro_mputfur_352,
Mus musculus ENSMUSG00000036093 ortholog_one2one 1 retrogene
retro_mmus_2232,
Nomascus leucogenys ENSNLEG00000011191 ortholog_one2one 2 retrogenes
retro_nleu_1259, retro_nleu_2280,
Otolemur garnettii ENSOGAG00000011424 ortholog_one2one 6 retrogenes
retro_ogar_1879, retro_ogar_2112, retro_ogar_2675, retro_ogar_3146, retro_ogar_3465, retro_ogar_728,
Pongo abelii ENSPPYG00000012848 ortholog_one2one 4 retrogenes
retro_pabe_3711, retro_pabe_3806, retro_pabe_3832, retro_pabe_621,
Pan troglodytes ENSPTRG00000012538 ortholog_one2one 5 retrogenes
retro_ptro_1486, retro_ptro_3134, retro_ptro_3175, retro_ptro_3262, retro_ptro_514,
Ictidomys tridecemlineatus ENSSTOG00000016326 ortholog_one2many 1 retrogene
retro_itri_62,
Tupaia belangeri ENSTBEG00000011511 ortholog_one2one 8 retrogenes
retro_tbel_1173, retro_tbel_1540, retro_tbel_3202, retro_tbel_3464, retro_tbel_3681, retro_tbel_3835, retro_tbel_4207, retro_tbel_4665,
Tursiops truncatus ENSTTRG00000015564 ortholog_one2one 2 retrogenes
retro_ttru_1008, retro_ttru_1843,
Vicugna pacos ENSVPAG00000002172 ortholog_one2one 2 retrogenes
retro_vpac_318, retro_vpac_399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_105 78.57 69.27
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2. retro_dnov_226 64.84 99.44
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3. retro_dnov_563 67.71 53.63
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4. retro_dnov_671 60.47 70.39
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5. retro_dnov_713 65.00 87.15
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6. retro_dnov_811 66.91 77.09
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7. retro_dnov_818 69.14 87.71
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8. retro_dnov_881 64.60 62.57
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9. retro_dnov_1165 59.22 57.54
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10. retro_dnov_1244 67.65 55.87
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11. retro_dnov_1953 93.94 91.62
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12. retro_dnov_2159 87.60 67.04
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13. retro_dnov_2265 53.04 100.00
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14. retro_dnov_2268 58.46 70.95
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15. retro_dnov_2344 68.22 58.66
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16. retro_dnov_2394 74.58 65.36
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Download FASTA sequences of all ENSDNOG00000013331 retrocopies