RetrogeneDB ID: | retro_cjac_1255 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 14:13189109..13189548(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000003311 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.19 % |
Parental protein coverage: | 82.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LYQFSMNEVVHTSPTIGSNVEEIVINN-TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISV |
LYQFSMNE.VHTSP.IGSN..EIVINN.TRFL.WDIGGQESLRSSWNTYYTNTEFVIVV.DST.RERIS. | |
Retrocopy | LYQFSMNEIVHTSPAIGSNIKEIVINN>TRFLIWDIGGQESLRSSWNTYYTNTEFVIVVADSTERERISL |
Parental | TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW |
TRE.LYKMLAHED.RKAGLLIFANK.DVKEC.TVAEISQFLKLTSIKDHQWHIQ.CCALTGEGL.QGLEW | |
Retrocopy | TRE-LYKMLAHEDVRKAGLLIFANKEDVKECLTVAEISQFLKLTSIKDHQWHIQVCCALTGEGLFQGLEW |
Parental | MMSRLKIR |
MMS.LKIR | |
Retrocopy | MMSQLKIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 33 .99 RPM |
SRP051959_heart | 0 .00 RPM | 52 .02 RPM |
SRP051959_kidney | 0 .04 RPM | 37 .78 RPM |
SRP051959_liver | 0 .00 RPM | 29 .33 RPM |
SRP051959_lung | 0 .00 RPM | 52 .66 RPM |
SRP051959_lymph_node | 0 .00 RPM | 33 .06 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 35 .25 RPM |
SRP051959_spleen | 0 .02 RPM | 44 .58 RPM |