RetrogeneDB ID: | retro_ecab_417 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 17:38085563..38086128(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SET | ||
Ensembl ID: | ENSECAG00000009117 | ||
Aliases: | None | ||
Description: | SET nuclear oncogene [Source:HGNC Symbol;Acc:10760] |
Percent Identity: | 64.62 % |
Parental protein coverage: | 74.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | EKEQQEAIEHIDEVQNEIDRLNEQASEEI-LKVEQKYNKLRQP-FFQKRSELIAKIPNFWVTTFVNHPQV |
EKEQQEA..H.DE.QNE.DRLNEQA..EI.LKV.QKYNK...P.FF........K....W......H... | |
Retrocopy | EKEQQEAVGHVDEIQNEMDRLNEQAHKEI<LKVQQKYNKFH*P>FFRRGWNCSPKSQILWEYLSAIHK-- |
Parental | SALLGEEDEEA-LHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKILSKEFHLNESGDPSSKSTEIKWK |
SALLGE.DE...L..L.RVE..EFEDIKSGYRIDFYF.ENPYF.N...S.EF...ES.DPS.KST.IKWK | |
Retrocopy | SALLGEDDEGS<LRCLRRVEDREFEDIKSGYRIDFYFEENPYFKNEVFSREFPETESSDPSLKSTKIKWK |
Parental | SGKDLTKRSSQTQNKASRKRQHEEPE-SFFTWFTDHSDAGADELGEVIKDDIWPN |
SGKDLTKR.SQT.NK..RK.QHEE.E.SF..WFT.HSD.GAD.L.EV.KDDIWPN | |
Retrocopy | SGKDLTKR*SQTHNKTDRKGQHEESE<SFLGWFTGHSDTGADALEEVSKDDIWPN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 51 .24 RPM |
SRP021940_cerebellum | 0 .00 RPM | 73 .48 RPM |
SRP021940_embryo | 0 .03 RPM | 174 .00 RPM |
SRP021940_placental_villous | 0 .00 RPM | 70 .39 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 54 .90 RPM |
SRP021940_testis | 0 .00 RPM | 43 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015686 | 7 retrocopies | |
Bos taurus | ENSBTAG00000020959 | 8 retrocopies | |
Canis familiaris | ENSCAFG00000032728 | 2 retrocopies | |
Equus caballus | ENSECAG00000009117 | 4 retrocopies | |
Felis catus | ENSFCAG00000005848 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014291 | 13 retrocopies | |
Mustela putorius furo | ENSMPUG00000013069 | 10 retrocopies | |
Mus musculus | ENSMUSG00000054766 | 17 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017595 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007501 | 12 retrocopies | |
Otolemur garnettii | ENSOGAG00000007635 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019659 | 17 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010546 | 6 retrocopies |