RetrogeneDB ID: | retro_ecab_633 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 24:7959572..7960107(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000009059 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.87 % |
Parental protein coverage: | 84.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | YGVEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKMAASIMNPYIKRSVKMKSLNDMTAKER-FSP |
Y...G.YAT.LYSAASKQNKLEQVEKELL.VAQILKEP.MAASIMNPYIK.S.K.KSLNDMTAKER.FSP | |
Retrocopy | YCIKGHYATELYSAASKQNKLEQVEKELLKVAQILKEPRMAASIMNPYIKHSIKVKSLNDMTAKER>FSP |
Parental | LTSNLI-NLLAE-NGRLSNTPGVVSAFSTIMSVHRGEVPCTVTTASPLDEATLAELQTVLKSFLSKGQVL |
L.SNLI.N.LAE..GRLSNTPGV.SAFSTIMS...GE.PCT.TTASPLDEAT..ELQTVLKSFLSKGQVL | |
Retrocopy | LMSNLI<NFLAE<KGRLSNTPGVISAFSTIMSIPQGEEPCTATTASPLDEATVPELQTVLKSFLSKGQVL |
Parental | KLEVK-NDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMREVF |
KLEVK..DPSIMG.M...I.EKYVDMSAKT.IQKLSRAM...F | |
Retrocopy | KLEVK<TDPSIMGEMVICIEEKYVDMSAKTNIQKLSRAMQQIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 53 .01 RPM |
SRP021940_cerebellum | 0 .10 RPM | 196 .41 RPM |
SRP021940_embryo | 0 .00 RPM | 117 .15 RPM |
SRP021940_placental_villous | 0 .00 RPM | 94 .73 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 59 .90 RPM |
SRP021940_testis | 0 .00 RPM | 197 .90 RPM |