RetrogeneDB ID: | retro_mmul_253 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:2922081..2922723(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000013925 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1726 | ||
Ensembl ID: | ENSMMUG00000015504 | ||
Aliases: | None | ||
Description: | ATP synthase subunit O, mitochondrial [Source:RefSeq peptide;Acc:NP_001182512] |
Percent Identity: | 89.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAPGVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILK |
MAAP.VSGLSRQVRCFSTSVVRPFAKLVRPPVQVY.IEGRYATALYSAASKQ.KLE.VEKELLRVAQILK | |
Retrocopy | MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYSIEGRYATALYSAASKQSKLEEVEKELLRVAQILK |
Parental | EPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNAQGVVSAFSTMMSVHRGEVP |
EPKVAASVLNPYVKRS..VKSL.DITAKERFSP.TTN.IN.LAENGRLSN.QGVVSAF.TMMSVHRGEVP | |
Retrocopy | EPKVAASVLNPYVKRSVRVKSLKDITAKERFSPVTTNWINVLAENGRLSNTQGVVSAFFTMMSVHRGEVP |
Parental | CTVTTASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSIMGGMIVRIGEKYVDMSVRTKIQKLGRAMR |
CTVTTASPLEEA.LSELKTVLKSF.SQGQVLKLEAKTD.SI.GGM.VRIGEKYV..SV.TKIQKLGRAM. | |
Retrocopy | CTVTTASPLEEAILSELKTVLKSFVSQGQVLKLEAKTDLSITGGMTVRIGEKYVGTSVKTKIQKLGRAMW |
Parental | EAV |
E.V | |
Retrocopy | EVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 101 .52 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 109 .79 RPM |
SRP007412_cerebellum | 0 .06 RPM | 85 .63 RPM |
SRP007412_heart | 0 .00 RPM | 222 .94 RPM |
SRP007412_kidney | 0 .12 RPM | 149 .41 RPM |
SRP007412_liver | 0 .08 RPM | 66 .70 RPM |
SRP007412_testis | 0 .04 RPM | 92 .27 RPM |