RetrogeneDB ID: | retro_ecab_814 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:56002482..56002985(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1orf43 | ||
Ensembl ID: | ENSECAG00000017585 | ||
Aliases: | None | ||
Description: | chromosome 1 open reading frame 43 [Source:HGNC Symbol;Acc:29876] |
Percent Identity: | 64.77 % |
Parental protein coverage: | 67.59 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAM-KSRRGPHV-PVGHNA-PKDLKEEIDIRLS |
MASGSN.LS.VN.VL...Y..LVFVLL.I..K...M.FAM.KSRRGP...P.G..A.P.DLKEE.DI.LS | |
Retrocopy | MASGSN*LSRVNAVLAEVYRNLVFVLLLILGKK*TMCFAM>KSRRGPDL<PCGTRA<PEDLKEETDIQLS |
Parental | RVQDIKYEPQLLADDDARLLQLETQGNQNCYNYLYRMKALDAI-RASEIPFHADGRHPCSLMGKNFRSYL |
R.QDIKYEPQLL.DD.AR.LQLETQG.Q.C.NYLYRMKAL.A..RASE.PF.A.G.H.....GK.F..YL | |
Retrocopy | RLQDIKYEPQLLEDDGARILQLETQGKQKCHNYLYRMKALEAT<RASETPFQAEGWHS---WGKDFCPYL |
Parental | LDLRNSSTP-FKGVRKALIDTLLDGYETARYGTGVF |
LDLRN.STP.FKGV.KAL.DTLLDG........G.. | |
Retrocopy | LDLRNTSTP>FKGVCKALTDTLLDG*DGPLWDMGLW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 19 .48 RPM |
SRP021940_cerebellum | 0 .00 RPM | 37 .34 RPM |
SRP021940_embryo | 0 .10 RPM | 26 .14 RPM |
SRP021940_placental_villous | 0 .00 RPM | 30 .60 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 20 .64 RPM |
SRP021940_testis | 0 .00 RPM | 77 .56 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011865 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009722 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019160 | 1 retrocopy | |
Equus caballus | ENSECAG00000017585 | 2 retrocopies |
retro_ecab_618, retro_ecab_814 ,
|
Echinops telfairi | ENSETEG00000001056 | 15 retrocopies | |
Macropus eugenii | ENSMEUG00000002600 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000013338 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017237 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000012008 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017758 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012915 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015824 | 1 retrocopy |