RetrogeneDB ID: | retro_etel_1633 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_284195:42812..43402(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000015316 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000001056 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.3 % |
Parental protein coverage: | 77.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASSSNWLSGVNVVLVMAYGSLVFVLLFI-FVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRV |
M.S.S.WLSGVNVVLVMAY.SLVFVLLFI.FVKRQIM..AMKSRRGPHVPVGH.APKDLKEEIDI.LSRV | |
Retrocopy | MSSRSDWLSGVNVVLVMAYRSLVFVLLFI<FVKRQIMHLAMKSRRGPHVPVGHYAPKDLKEEIDIPLSRV |
Parental | QDIKYEPQLLADDDARLLQLETQGNQNCYNYLYRMKALDALRASEIPIHTKGRHPRSLMSRNFRSYLLDL |
Q..K.E.QLLADDDA.L.QLETQGNQ.CYN.LY.MK.LDAL.ASEIP.HT.GRHP...M.R.FRSYLL.L | |
Retrocopy | QCLKLEAQLLADDDASLPQLETQGNQHCYNCLYKMKVLDALCASEIPFHTEGRHPHPIMDRKFRSYLLHL |
Parental | RNATTPFKGVRKALIDTLLDGYETARYGTGVFSQSEYLRYQEALTELATAVKARSGSS |
RNATTPFKG..KALID.LL.GYE.ARY.T.VF.QSEYL.Y.EALTELATAVKA.SGSS | |
Retrocopy | RNATTPFKGIYKALIDPLLHGYEAARYRTWVFGQSEYLHYREALTELATAVKA*SGSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011865 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009722 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019160 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005454 | 1 retrocopy | |
Equus caballus | ENSECAG00000017585 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001056 | 15 retrocopies | |
Macropus eugenii | ENSMEUG00000002600 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000013338 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017237 | 3 retrocopies | |
Mus musculus | ENSMUSG00000027942 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000012008 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000007244 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000000785 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017758 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012915 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013866 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012777 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015824 | 1 retrocopy |