RetrogeneDB ID: | retro_eeur_112 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_7127:60280..60763(-) | ||
Located in intron of: | ENSEEUG00000003035 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GSTM3 | ||
Ensembl ID: | ENSEEUG00000014211 | ||
Aliases: | None | ||
Description: | glutathione S-transferase mu 3 (brain) [Source:HGNC Symbol;Acc:4635] |
Percent Identity: | 90.06 % |
Parental protein coverage: | 71.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PYLMDGKNKITQSNAIMRYIARKHNLCGETEEEKIRVDIMENQIMDFRMQLVKLCYNPDHEKLKPQYLEQ |
P.LMDGKNKITQS.AIMRYIA.KHNLCGETEEEKI.VDIMENQIMDF.MQLV.LCYNPDHEKLKPQYLEQ | |
Retrocopy | PCLMDGKNKITQSKAIMRYIACKHNLCGETEEEKIQVDIMENQIMDFCMQLVRLCYNPDHEKLKPQYLEQ |
Parental | LPGQLKLFSLFLGKFSWFAGEKITFVDFLTYDVLDQNRMFEPKCLDEFPNLKDFMCRFEALEKIASYMQS |
L.GQLKLFSLFLGKFSWFAGEKITFVDFL.YDVLDQN.MFEPKCLDE.PN.KDFMC.FE.LEKIASY.QS | |
Retrocopy | LLGQLKLFSLFLGKFSWFAGEKITFVDFLIYDVLDQNHMFEPKCLDESPNWKDFMCHFETLEKIASYTQS |
Parental | DRFFKLPINNKMAQWGNKRLC |
DR.FKLPINNKM.QWGNKRLC | |
Retrocopy | DRLFKLPINNKMSQWGNKRLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .22 RPM | 42 .38 RPM |
SRP017611_kidney | 15 .00 RPM | 221 .48 RPM |
SRP017611_liver | 7 .40 RPM | 95 .50 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005380 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000003168 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000014211 | 1 retrocopy |
retro_eeur_112 ,
|
Echinops telfairi | ENSETEG00000005817 | 2 retrocopies | |
Homo sapiens | ENSG00000134202 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005185 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008029 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000001899 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004032 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003302 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001063 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000047034 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006821 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006736 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009682 | 1 retrocopy |