RetrogeneDB ID: | retro_etel_1910 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_313592:2450..2921(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000005817 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.7 % |
Parental protein coverage: | 70.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | YDRSQWLDVKFKLDLDFPNL-PYLVDGKNK-ITQSNAILRYIARKHNMCGNTEEEKIRVDIMENQIMDFR |
YDRSQWL.V.FKL.LDFPNL.P.L..G..................H.MCG..EEEKIR.DI..NQ.MDF. | |
Retrocopy | YDRSQWLNVTFKLVLDFPNL>PTLWRGRTR>LSEQRHLVLRRSQAHSMCGDPEEEKIRGDIAYNQVMDFH |
Parental | MQLVRIS-YSPDHEKLKPQYLEQLPGNLKQFSLFLGKF-SWFAGEKLTFVDFLTYDVLDQNRMFEPKCLD |
.QLV.I..YSPDHEKLKP.YLE.LPGNLK.FSL.LGKF.SW.AGEKL.FVDFL..D.L.Q.RMFEPKCLD | |
Retrocopy | RQLVPIC<YSPDHEKLKPLYLERLPGNLK*FSLCLGKF<SWSAGEKLNFVDFLP*DALEQKRMFEPKCLD |
Parental | EFPNLKAFMCRFEALEKIAEY |
EFP.LKA.MCRFEALEKIA.Y | |
Retrocopy | EFPHLKALMCRFEALEKIAVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005380 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000003168 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000014211 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005817 | 2 retrocopies |
retro_etel_1074, retro_etel_1910 ,
|
Homo sapiens | ENSG00000134202 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005185 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008029 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000001899 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004032 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003302 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001063 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000047034 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006821 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006736 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009682 | 1 retrocopy |