RetrogeneDB ID: | retro_eeur_130 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_8059:14247..14569(-) | ||
Located in intron of: | ENSEEUG00000004247 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF3F | ||
Ensembl ID: | ENSEEUG00000001226 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 3, subunit F [Source:HGNC Symbol;Acc:3275] |
Percent Identity: | 75.45 % |
Parental protein coverage: | 58.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DLIMKTCFSSNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA-DNTVGRFLMSLV-NQVPK |
DLI.KTCFS.N.VIGLSSD.QQVG.ASARIQ.ALS.VLQYA...LSGKVSA.DNT..R.LMSLV.NQVP. | |
Retrocopy | DLILKTCFSPNQVIGLSSDFQQVGCASARIQHALSSVLQYA*GMLSGKVSA<DNTMRRLLMSLV<NQVPR |
Parental | IVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL |
I.PDDF..ML.S.IN.LLMV.YLANLTQS.IA.N.K.VNL | |
Retrocopy | IIPDDFKSMLYSHINNLLMVMYLANLTQSEIAFNKKFVNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 102 .21 RPM |
SRP017611_liver | 0 .00 RPM | 64 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004861 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011903 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001226 | 1 retrocopy |
retro_eeur_130 ,
|
Echinops telfairi | ENSETEG00000002717 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000011702 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000000825 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003220 | 3 retrocopies |