RetrogeneDB ID: | retro_eeur_250 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_223265:4483..4854(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003647 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSEEUG00000014630 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 67.19 % |
Parental protein coverage: | 99.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MPPKDDKKKK-DAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEV-PNYKLI |
MPPKD.KKKK.D..K.AKK.K.PVNKSG.KAK.KK..KGK..DKLNNL.LFDK.TYDKLCK....N.K.I | |
Retrocopy | MPPKDYKKKK>DSRKLAKKNKEPVNKSGEKAKMKKSAKGKFQDKLNNLILFDKGTYDKLCKQI>SNIKII |
Parental | TPAVVSER-LKIRGSLARAALQELLSKG-LIKLVSKHRAQVIYTRNTKGGDAPAAGED |
TP..V.E...KI.G.LAR.A.Q....KG.LI.LVSKHRA.VIYTRNTK.G.APA.GE. | |
Retrocopy | TPTFVFEK>MKICGLLARDAPQ-MAVKG<LINLVSKHRAEVIYTRNTKSGVAPASGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 92 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 231 .61 RPM |
SRP017611_liver | 0 .00 RPM | 165 .28 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027772 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013691 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007880 | 7 retrocopies | |
Equus caballus | ENSECAG00000020978 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014630 | 6 retrocopies | |
Mus musculus | ENSMUSG00000009927 | 15 retrocopies | |
Otolemur garnettii | ENSOGAG00000007265 | 3 retrocopies |