RetrogeneDB ID: | retro_dnov_2219 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_56303:3657..3966(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSDNOG00000007880 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 77.14 % |
Parental protein coverage: | 83.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQ |
K.P.N..G.KAKKK.WSKGKV.DKL.NLVLFDKA...KLC.EVPNYKLITPAV.SERLKI...LAR.ALQ | |
Retrocopy | KHPMNIPGDKAKKK-WSKGKVWDKLHNLVLFDKAIH-KLCTEVPNYKLITPAVLSERLKIPSFLAREALQ |
Parental | EL-LSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGE |
EL.LSK.LIKLV.K.RAQVI.TR.T.GGDAPAAGE | |
Retrocopy | ELMLSKELIKLVLKPRAQVIHTRSTEGGDAPAAGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 569 .60 RPM |
SRP012922_cerebellum | 0 .00 RPM | 237 .82 RPM |
SRP012922_heart | 0 .00 RPM | 366 .61 RPM |
SRP012922_kidney | 0 .00 RPM | 677 .10 RPM |
SRP012922_liver | 0 .00 RPM | 368 .59 RPM |
SRP012922_lung | 0 .00 RPM | 814 .17 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 474 .60 RPM |
SRP012922_spleen | 0 .00 RPM | 838 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027772 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013691 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007880 | 7 retrocopies |
retro_dnov_1092, retro_dnov_1566, retro_dnov_2219 , retro_dnov_2593, retro_dnov_346, retro_dnov_877, retro_dnov_973,
|
Equus caballus | ENSECAG00000020978 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014630 | 6 retrocopies | |
Homo sapiens | ENSG00000118181 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000025540 | 7 retrocopies | |
Mus musculus | ENSMUSG00000009927 | 15 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017256 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000007265 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025915 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000004361 | 10 retrocopies | |
Pteropus vampyrus | ENSPVAG00000012492 | 12 retrocopies | |
Rattus norvegicus | ENSRNOG00000027503 | 5 retrocopies | |
Sorex araneus | ENSSARG00000002284 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000010244 | 16 retrocopies | |
Tarsius syrichta | ENSTSYG00000005422 | 15 retrocopies |