RetrogeneDB ID: | retro_mmus_2393 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:123926235..123926578(+) | ||
Located in intron of: | ENSMUSG00000028646 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082515 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps25 | ||
Ensembl ID: | ENSMUSG00000009927 | ||
Aliases: | Rps25, 2810009D21Rik | ||
Description: | ribosomal protein S25 [Source:MGI Symbol;Acc:MGI:1922867] |
Percent Identity: | 75.83 % |
Parental protein coverage: | 94.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSER |
K..K....S..K..DP.N.SGGKAKKK.WSKGKV.DKLNNL.LFDKATYDKLCKEV.NYKLIT.AVVS.R | |
Retrocopy | KDNKKMPESRLKKSDPINTSGGKAKKK-WSKGKVWDKLNNLILFDKATYDKLCKEVSNYKLITLAVVSAR |
Parental | LKIRGS-LARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDA-PAAGED |
LKIRGS.L..AAL.ELLSK.L.KLVSKHRA....TRNTKGGDA.PAAGED | |
Retrocopy | LKIRGS<LPMAAL*ELLSKRLFKLVSKHRA--THTRNTKGGDA<PAAGED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .16 RPM | 51 .91 RPM |
SRP007412_cerebellum | 0 .13 RPM | 34 .65 RPM |
SRP007412_heart | 0 .12 RPM | 53 .73 RPM |
SRP007412_kidney | 0 .12 RPM | 63 .54 RPM |
SRP007412_liver | 0 .03 RPM | 64 .01 RPM |
SRP007412_testis | 0 .14 RPM | 52 .01 RPM |