RetrogeneDB ID: | retro_mmus_1368 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:90723634..90723997(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps25 | ||
Ensembl ID: | ENSMUSG00000009927 | ||
Aliases: | Rps25, 2810009D21Rik | ||
Description: | ribosomal protein S25 [Source:MGI Symbol;Acc:MGI:1922867] |
Percent Identity: | 83.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPPKDDKKKKDAGKSAKKDKDPV-NKSGGKAKKKKWSKGK-VRDKLNNLVLFDKATYDKLCKEVPNYKLI |
M.PKD..KK.DAGKS.KKDKDPV.NKSGGKAKKK.WSK.K.V.DKLNNLVLFDKATYDKLCKEV..YKL. | |
Retrocopy | MAPKD-RKKQDAGKSVKKDKDPV>NKSGGKAKKK-WSKVK<VQDKLNNLVLFDKATYDKLCKEVSSYKLN |
Parental | TPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
T..VVSERLK.RGSLA.AALQELLSKGL.KL.SKHRAQVIYTRNTKGG..PAAGEDA | |
Retrocopy | T--VVSERLKTRGSLASAALQELLSKGLLKLGSKHRAQVIYTRNTKGGGGPAAGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 51 .91 RPM |
SRP007412_cerebellum | 0 .04 RPM | 34 .65 RPM |
SRP007412_heart | 0 .00 RPM | 53 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 63 .54 RPM |
SRP007412_liver | 0 .00 RPM | 64 .01 RPM |
SRP007412_testis | 0 .00 RPM | 52 .01 RPM |