RetrogeneDB ID: | retro_mmus_1455 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:30139458..30139829(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps25 | ||
Ensembl ID: | ENSMUSG00000009927 | ||
Aliases: | Rps25, 2810009D21Rik | ||
Description: | ribosomal protein S25 [Source:MGI Symbol;Acc:MGI:1922867] |
Percent Identity: | 93.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP |
MPPK.D.KKKDAGK.AKKDKDPVNKSGGKA.KKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP | |
Retrocopy | MPPKEDRKKKDAGKLAKKDKDPVNKSGGKA-KKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP |
Parental | AVVSERLKIRGSLARAALQELLSKGLIKLVSKHR-AQVIYTRNTKGGDAPAAGEDA |
AVVSERLKI.GSLARAALQELLSKGLIKLVSKH..AQVIYTRNTKGGDAP.AGEDA | |
Retrocopy | AVVSERLKI*GSLARAALQELLSKGLIKLVSKHK<AQVIYTRNTKGGDAPTAGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 51 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 34 .65 RPM |
SRP007412_heart | 0 .06 RPM | 53 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 63 .54 RPM |
SRP007412_liver | 0 .03 RPM | 64 .01 RPM |
SRP007412_testis | 0 .00 RPM | 52 .01 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_46296 | 191 libraries | 434 libraries | 423 libraries | 24 libraries | 0 libraries |