RetrogeneDB ID: | retro_eeur_256 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_225397:1667..2006(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HRSP12 | ||
Ensembl ID: | ENSEEUG00000014805 | ||
Aliases: | None | ||
Description: | heat-responsive protein 12 [Source:HGNC Symbol;Acc:16897] |
Percent Identity: | 61.06 % |
Parental protein coverage: | 83.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QAVLVGKTVYVSGQVGMDPSSGQLVPGGVTAETKQXXXXXXXXXXXXXXXXXXXVKTTVLLADINDFNTV |
QAVLVGKTVYV.GQVGMDPSSGQLVPGGVTAETKQ...................VKTTVLLADINDF.TV | |
Retrocopy | QAVLVGKTVYVWGQVGMDPSSGQLVPGGVTAETKQALKNMGEILKAADCDFSNVVKTTVLLADINDFDTV |
Parental | NEIYKQXXXXXXXXXXXXXXXXXXXGRRVEIGGIAIQGPFTSM |
NEIYKQ...................G.RVE...IAIQGPFTSM | |
Retrocopy | NEIYKQYFKDYFPARDASQVAALPKGSRVETESIAIQGPFTSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 9 .83 RPM | 4 .51 RPM |
SRP017611_kidney | 334 .57 RPM | 141 .78 RPM |
SRP017611_liver | 270 .59 RPM | 122 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030250 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001278 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000015560 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000025138 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014805 | 1 retrocopy |
retro_eeur_256 ,
|
Gorilla gorilla | ENSGGOG00000001185 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002078 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011825 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000006575 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022323 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000021532 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001465 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011452 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000002602 | 10 retrocopies |