RetrogeneDB ID: | retro_eeur_490 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_324829:12206..12728(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7A | ||
Ensembl ID: | ENSEEUG00000000203 | ||
Aliases: | None | ||
Description: | ribosomal protein L7a [Source:HGNC Symbol;Acc:10364] |
Percent Identity: | 99.43 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVD |
TQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVD | |
Retrocopy | TQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVD |
Parental | PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDE |
PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKL.EAIRTNYNDRYDE | |
Retrocopy | PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLGEAIRTNYNDRYDE |
Parental | IRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG |
IRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG | |
Retrocopy | IRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 76 .22 RPM | 97 .17 RPM |
SRP017611_kidney | 129 .78 RPM | 204 .23 RPM |
SRP017611_liver | 90 .52 RPM | 157 .40 RPM |