Parental gene:

RPL7A, ENSDNOG00000024424

Aliases:None
Description:ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_4128:20382..23098(+)


>ENSDNOG00000024424
CAGTTCACCCAGGCCTTGGACCGCCAGACAGCCACGCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAAGCA
GGAGAAGAAGCAGAGGCTGCTGGCCCGGGCTGAGAAGAAGGCTGCCGGCAAAGGGGACGTCCCCACCAAGCGGCCGCCTG
TGCTTCGAGCAGGGGTGAACACTGTCACCACCCTGGTAGAGAACAAGAAGGCCCAGCTGGTGGTGATCGCACATTACGTG
GACGTGGACCCAATCGAGCTGGTTGTCTTCCTGCCCGCCTTGTGCCGTAAAATGGGGGTCCCCTACTGCATCATCAAGGG
AAAGGCCAGGCTGGGACGGCTCGTCCACAGAAAGACCTGCACCACGCTTGCCTTCACGCAGGTCAACTCGGAAGACAAAG
GAGCGCTAGCTAAGCTGGTGGAAGCTATTAGAACCAATTACAACGACAGATATGACGAGATCCGTCGTCACTGGGGAGGC
AATGTCCTGGGTCCCAAGTCCGTGGCTCGCATTGCCAAGCTGGAGAAGGCAAAAGCTAAAGAACTTGCCACTAAACTGGG
TTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 569 .99 RPM
SRP012922_cerebellum 256 .10 RPM
SRP012922_heart 305 .59 RPM
SRP012922_kidney 590 .03 RPM
SRP012922_liver 261 .31 RPM
SRP012922_lung 708 .18 RPM
SRP012922_quadricep_muscle 435 .48 RPM
SRP012922_spleen 787 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 possible_ortholog 29 retrogenes
Canis familiaris ENSCAFG00000017680 possible_ortholog 36 retrogenes
Callithrix jacchus ENSCJAG00000014827 possible_ortholog 3 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2one 3 retrogenes
Equus caballus ENSECAG00000008548 possible_ortholog 2 retrogenes
Erinaceus europaeus ENSEEUG00000000203 possible_ortholog 2 retrogenes
Felis catus ENSFCAG00000005825 possible_ortholog 20 retrogenes
Gorilla gorilla ENSGGOG00000014442 possible_ortholog 48 retrogenes
Loxodonta africana ENSLAFG00000006436 possible_ortholog 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2one 16 retrogenes
Macaca mulatta ENSMMUG00000022341 possible_ortholog 9 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2one 3 retrogenes
Mustela putorius furo ENSMPUG00000012398 possible_ortholog 13 retrogenes
Mus musculus ENSMUSG00000062647 possible_ortholog 10 retrogenes
Nomascus leucogenys ENSNLEG00000013068 possible_ortholog 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 possible_ortholog 16 retrogenes
Pongo abelii ENSPPYG00000019730 possible_ortholog 52 retrogenes
Rattus norvegicus ENSRNOG00000049097 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2one 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000003671 possible_ortholog 3 retrogenes
Tupaia belangeri ENSTBEG00000008595 possible_ortholog 26 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2one 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_169 75.42 62.03
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2. retro_dnov_302 50.38 68.98
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3. retro_dnov_825 69.85 72.73
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4. retro_dnov_1245 55.00 63.64
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5. retro_dnov_1509 69.75 62.57
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6. retro_dnov_1861 75.39 99.47
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7. retro_dnov_2538 90.43 100.00
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8. retro_dnov_2591 67.60 94.12
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Download FASTA sequences of all ENSDNOG00000024424 retrocopies