Parental gene:

Rpl7a, ENSMUSG00000062647

Aliases:Rpl7a, Surf3
Description:ribosomal protein L7A [Source:MGI Symbol;Acc:MGI:1353472]
Organism:Mouse (Mus musculus)
Coordinates:2:26910763..26913318(+)


>ENSMUSG00000062647
ATGCCCAAAGGGAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCCGCCGTCGTCAAGAAGCAGGAGGCCAAGAAGGT
GGTCAACCCTCTGTTCGAGAAGAGGCCCAAGAACTTCGGCATTGGACAGGACATCCAGCCCAAAAGAGATTTAACGCGCT
TCGTCAAATGGCCCCGCTACATCAGACTGCAGCGGCAAAGAGCTATCCTCTACAAGCGGCTCAAAGTCCCTCCTGCCATT
AACCAGTTCACCCAGGCCCTGGACAGGCAGACAGCTACTCAGCTGCTTAAGCTTGCCCACAAGTACAGGCCAGAGACAAA
GCAAGAGAAGAAGCAAAGGCTACTGGCCCGTGCTGAGAAGAAAGCTGCTGGCAAAGGCGACGTCCCAACTAAGAGACCAC
CTGTCCTCCGAGCAGGAGTCAATACAGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATTGCCCATGAC
GTAGACCCCATTGAGCTGGTGGTTTTCCTACCTGCTCTGTGTCGAAAGATGGGGGTGCCCTACTGCATCATCAAGGGAAA
GGCCAGGCTGGGGCACCTGGTCCACAGGAAGACATGCACCACCGTTGCCTTCACACAGGTTAACTCGGAAGACAAGGGTG
CTCTGGCTAAGCTGGTGGAAGCTATTAGGACCAATTATAATGACAGATATGACGAGATCCGTCGCCACTGGGGAGGCAAC
GTCCTGGGTCCTAAGTCTGTGGCTCGAATTGCCAAGCTGGAAAAAGCAAAGGCTAAAGAACTCGCCACTAAATTGGGTTA
A

Library Parental gene expression (RPM)
SRP007412_brain 74 .88 RPM
SRP007412_cerebellum 42 .73 RPM
SRP007412_heart 120 .91 RPM
SRP007412_kidney 108 .86 RPM
SRP007412_liver 110 .03 RPM
SRP007412_testis 59 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 possible_ortholog 29 retrogenes
Bos taurus ENSBTAG00000011559 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000017680 possible_ortholog 36 retrogenes
Callithrix jacchus ENSCJAG00000014827 possible_ortholog 3 retrogenes
Cavia porcellus ENSCPOG00000001324 possible_ortholog 4 retrogenes
Dasypus novemcinctus ENSDNOG00000024424 possible_ortholog 8 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2many 3 retrogenes
Equus caballus ENSECAG00000008548 possible_ortholog 2 retrogenes
Erinaceus europaeus ENSEEUG00000000203 possible_ortholog 2 retrogenes
Felis catus ENSFCAG00000005825 possible_ortholog 20 retrogenes
Homo sapiens ENSG00000148303 possible_ortholog 21 retrogenes
Gorilla gorilla ENSGGOG00000014442 ortholog_many2many 48 retrogenes
Loxodonta africana ENSLAFG00000006436 possible_ortholog 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2many 16 retrogenes
Myotis lucifugus ENSMLUG00000004666 possible_ortholog 10 retrogenes
Macaca mulatta ENSMMUG00000022341 possible_ortholog 9 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2many 3 retrogenes
Mustela putorius furo ENSMPUG00000012398 possible_ortholog 13 retrogenes
Nomascus leucogenys ENSNLEG00000013068 possible_ortholog 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 possible_ortholog 16 retrogenes
Ochotona princeps ENSOPRG00000005726 possible_ortholog 4 retrogenes
Pongo abelii ENSPPYG00000019730 ortholog_one2many 52 retrogenes
Pteropus vampyrus ENSPVAG00000017045 possible_ortholog 11 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2many 4 retrogenes
Tupaia belangeri ENSTBEG00000008595 ortholog_one2many 26 retrogenes
Tarsius syrichta ENSTSYG00000005467 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_34 99.25 100.00
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2. retro_mmus_43 87.97 100.00
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3. retro_mmus_93 98.12 100.00
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4. retro_mmus_120 98.12 100.00
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5. retro_mmus_141 96.18 98.50
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6. retro_mmus_165 99.62 100.00
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7. retro_mmus_166 92.13 100.00
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8. retro_mmus_214 100.00 100.00
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9. retro_mmus_226 98.12 100.00
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10. retro_mmus_267 95.49 100.00
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Download FASTA sequences of all ENSMUSG00000062647 retrocopies