Parental gene:

ENSSTOG00000003671

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393479.1:3532320..3534600(-)


>ENSSTOG00000003671
CCGAAGGGAAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCCGCCGTGGTCAAGAAGCAGGAGGCTAAGAAGGTAGT
GAACCCGCTCTTCGAGAAGAGGCCGAAGAACTTCGGCATCGGACAGGACATCCAGCCCAAAAGGGACCTTACCCGCTTTG
TAAAATGGCCCCGCTACATCCGGCTGCAGCGGCAAAGGGCTATTCTCTATAAGCGGCTGAAAGTGCCTCCTGCGATTAAC
CAGTTCACCCAGGCCTTGGACCGCCAAACAGCCACCCAGCTGCTTAAGCTTGCCCACAAGTACAGACCTGAGACCAAGCA
GGAAAAGAAGCAGAGGCTGTTGGCCCGGGCTGAGAAGAAGGCTGCTGGCAAAGGGGATGTTCCCACAAAGAGACCACCTG
TCCTTCGAGCAGGGGTCAATACTGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTAGTGATCGCACATGATGTG
GATCCCATCGAGCTGGTTGTCTTCCTGCCTGCTCTGTGTCGCAAGATGGGAGTCCCTTACTGCATCATCAAGGGGAAGGC
TAGGCTGGGACGTCTGGTTCACAGGAAGACATGCACCACTGTTGCCTTCACACAGGTTAACTCGGAAGACAAAGGAGCTC
TGGCTAAGTTGGTGGAAGCTATCAGAACCAACTACAATGACAGATATGATGAGATCCGTCGCCACTGGGGAGGCAACGTT
CTGGGTCCAAAATCTGTGGCTCGCATTGCCAAGCTGGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGATAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011708 possible_ortholog 29 retrogenes
Bos taurus ENSBTAG00000011559 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000017680 possible_ortholog 36 retrogenes
Callithrix jacchus ENSCJAG00000014827 possible_ortholog 3 retrogenes
Cavia porcellus ENSCPOG00000001324 possible_ortholog 4 retrogenes
Dasypus novemcinctus ENSDNOG00000024424 possible_ortholog 8 retrogenes
Dipodomys ordii ENSDORG00000006471 ortholog_one2many 3 retrogenes
Equus caballus ENSECAG00000008548 possible_ortholog 2 retrogenes
Erinaceus europaeus ENSEEUG00000000203 possible_ortholog 2 retrogenes
Felis catus ENSFCAG00000005825 possible_ortholog 20 retrogenes
Homo sapiens ENSG00000148303 possible_ortholog 21 retrogenes
Gorilla gorilla ENSGGOG00000014442 ortholog_many2many 48 retrogenes
Loxodonta africana ENSLAFG00000006436 possible_ortholog 2 retrogenes
Macropus eugenii ENSMEUG00000014550 ortholog_one2many 16 retrogenes
Myotis lucifugus ENSMLUG00000004666 possible_ortholog 10 retrogenes
Macaca mulatta ENSMMUG00000022341 possible_ortholog 9 retrogenes
Monodelphis domestica ENSMODG00000012754 ortholog_one2many 3 retrogenes
Mustela putorius furo ENSMPUG00000012398 possible_ortholog 13 retrogenes
Nomascus leucogenys ENSNLEG00000013068 possible_ortholog 22 retrogenes
Otolemur garnettii ENSOGAG00000014027 possible_ortholog 16 retrogenes
Ochotona princeps ENSOPRG00000005726 possible_ortholog 4 retrogenes
Pongo abelii ENSPPYG00000019730 ortholog_one2many 52 retrogenes
Pteropus vampyrus ENSPVAG00000017045 possible_ortholog 11 retrogenes
Rattus norvegicus ENSRNOG00000049097 ortholog_one2many 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004337 ortholog_one2many 4 retrogenes
Tupaia belangeri ENSTBEG00000008595 ortholog_one2many 26 retrogenes
Tarsius syrichta ENSTSYG00000005467 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000007645 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_53 95.47 100.00
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2. retro_itri_920 59.19 77.74
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3. retro_itri_1034 72.86 99.62
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Download FASTA sequences of all ENSSTOG00000003671 retrocopies