RetrogeneDB ID: | retro_eeur_579 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_347900:50953..51188(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPE | ||
Ensembl ID: | ENSEEUG00000006187 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] |
Percent Identity: | 75.95 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QPI-NLIF-RYLQNRSRIQVWLYEQVNMRIEGCIIXXXXXXXXXXXDA-EIHSKTKSRKQLG-IMLKGDN |
QP..NLIF.RYLQNRSRIQVWLYEQVNM.IE.CII...........DA.EIHSKTKSRKQL..IMLKGDN | |
Retrocopy | QPVQNLIF>RYLQNRSRIQVWLYEQVNMWIEDCIIGFDEYMNLLLDDAEEIHSKTKSRKQLSQIMLKGDN |
Parental | ITLLQSVSN |
ITLLQSVSN | |
Retrocopy | ITLLQSVSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 1 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .88 RPM |
SRP017611_liver | 0 .00 RPM | 1 .13 RPM |