RetrogeneDB ID: | retro_eeur_613 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_365121:1039..1313(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003431 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPE | ||
Ensembl ID: | ENSEEUG00000006187 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] |
Percent Identity: | 78.26 % |
Parental protein coverage: | 98.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AYRGQGQKVQK-VMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIXXXXXXXXXXXDAE-IHSKTKS |
AY..QGQK.Q..VMVQPINLIFRYLQNRS.IQVWLYEQVNMRIEGCII...........D.E.IHSKTKS | |
Retrocopy | AYHSQGQKGQI>VMVQPINLIFRYLQNRSWIQVWLYEQVNMRIEGCIIDFDEYMNLILDDVENIHSKTKS |
Parental | RKQLG-IMLKGDNITLLQSVSN |
RKQLG.IMLKGDNITLLQSVSN | |
Retrocopy | RKQLGRIMLKGDNITLLQSVSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 1 .13 RPM |
SRP017611_kidney | 1 .13 RPM | 1 .88 RPM |
SRP017611_liver | 0 .00 RPM | 1 .13 RPM |