RetrogeneDB ID: | retro_etel_1751 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_291800:44459..45088(+) | ||
Located in intron of: | ENSETEG00000002578 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSETEG00000016984 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 64.41 % |
Parental protein coverage: | 86.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | GVKPSATQEELKKAYRKLALKYHPDK-NPNEG-EKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGG |
GVKPSATQEELKKAYRKLALK.HPDK.NPN.G.E.F.........L....KR.L.....E.AIKEG.AGG | |
Retrocopy | GVKPSATQEELKKAYRKLALKCHPDK>NPNGG>ESFNRFLKLIKCLLMQRKR*L----SEEAIKEGSAGG |
Parental | GFGSPMDIFDMFFGGGG-RMQRERRGKNVVHQLSVTLEDLYNGAT-RKLALQKNVICDKCEGRGGKKGAV |
G.GSPM.I...FFGGGG.R..RERRGKN..HQLSVT.E....GA..RK.ALQK.V..DKCE..G...... | |
Retrocopy | GLGSPMGILGVFFGGGG<RTKRERRGKNLGHQLSVTSENFHKGAA<RKPALQKSVV*DKCE--GPRWEGR |
Parental | CCPNCRG-TGMPIRIHQIGPGMVQQIKSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMK |
.CPNC.G.TG.....HQ.GPGMVQQI.SVC.ECQGH.E..SPK....SCNGRK.VREKK.L.VH.DK.MK | |
Retrocopy | GCPNCQG<TGTQLWLHQRGPGMVQQIQSVCTECQGHREQSSPKHGRESCNGRKTVREKKVL-VHNDKAMK |
Parental | DGQKITFHGEGD |
DGQKITFHG.GD | |
Retrocopy | DGQKITFHGGGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007589 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000001818 | 23 retrocopies |
retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
|
Echinops telfairi | ENSETEG00000004320 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000016984 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000007030 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003384 | 7 retrocopies | |
Mustela putorius furo | ENSMPUG00000004231 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000012366 | 1 retrocopy |