RetrogeneDB ID: | retro_fcat_1103 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:88811222..88811657(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000015224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.47 % |
Parental protein coverage: | 78.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTW-EPEENLDCPELIEA-FLNSQK |
K.NG.SK..EEAEP..FVVEKVL...VVNGK.E.FLK.KGFTDADNTW.EPEENL..PELIEA.FL...K | |
Retrocopy | KENGESKNIEEAEPGDFVVEKVLG*HVVNGKMEDFLK*KGFTDADNTW<EPEENLNYPELIEA>FLILKK |
Parental | AGKEKD-GTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADL |
..K....GTKR.SLSD.ES.DSKSKKKRDAADKPR.FARGL.PE...GATDSSGE..FLMK.KDS..ADL | |
Retrocopy | PVKXXXXGTKRQSLSDGESRDSKSKKKRDAADKPRDFARGLNPEQVTGATDSSGEFIFLMKQKDSGAADL |
Parental | VLAKEAN |
VL.KEAN | |
Retrocopy | VLTKEAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .87 RPM |
SRP017611_liver | 0 .00 RPM | 21 .63 RPM |