RetrogeneDB ID: | retro_fcat_473 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:61434219..61434740(-) | ||
Located in intron of: | ENSFCAG00000018372 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000015224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.32 % |
Parental protein coverage: | 98.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP |
MASNKTTLQK..KKQNGKSKK.EEA.PEEFV...VLDRRVVN.KVEYFLK.KGFTDADNTWEP.ENLDCP | |
Retrocopy | MASNKTTLQKVRKKQNGKSKK-EEAGPEEFVMRIVLDRRVVNRKVEYFLKGKGFTDADNTWEPAENLDCP |
Parental | ELIEAFLNSQK-AGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFL |
EL.EAFLNSQK.AGKEKDGTKRKSLSDSESDD..SK.K.....K...FA.GLDP..IIGATDSSG..MFL | |
Retrocopy | ELTEAFLNSQK<AGKEKDGTKRKSLSDSESDD--SKSKK----KRDAFAKGLDPK*IIGATDSSGDFMFL |
Parental | MKWKDSDEADLVLA-KEANMKCPQIVIAFYEERLTWHSCPED |
MKWKDS.EA.LVLA..EANMKCPQIVIAFYE.RLTWHSCP.D | |
Retrocopy | MKWKDSEEAGLVLANQEANMKCPQIVIAFYEDRLTWHSCPGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .80 RPM | 31 .33 RPM |
SRP017611_kidney | 0 .72 RPM | 25 .87 RPM |
SRP017611_liver | 0 .10 RPM | 21 .63 RPM |