RetrogeneDB ID: | retro_fcat_1519 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:42664052..42664510(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000015224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.03 % |
Parental protein coverage: | 84.7 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | EPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELI-EAFLNSQKAGKEKDGTKRKSL |
EP...VVEKV..R.V.NG.VE.F.KWK.FTD.DNT...EENLD.P.LI..AF.NSQKA.KEK....RKSL | |
Retrocopy | EPKDLVVEKVRYRCVENGRVE*FFKWKRFTDSDNT*KAEENLDHP*LI<QAFFNSQKAIKEKG--QRKSL |
Parental | SDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIV |
SDSESDD.KSKK.RD.AD.PR.FA.GL.P..I....D...EL.FLMKW.D.DE.D.VLAKEANMKCP.IV | |
Retrocopy | SDSESDDTKSKKERDVAD*PRCFANGLGPKQILSVIDNNKELIFLMKWRDADETDIVLAKEANMKCP*IV |
Parental | IAFYEERLTWHSCPED |
IA....R.T.HSCPED | |
Retrocopy | IAL*KKRQTLHSCPED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .87 RPM |
SRP017611_liver | 0 .00 RPM | 21 .63 RPM |