RetrogeneDB ID: | retro_cpor_66 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_22:9896130..9896679(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000023915 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSCPOG00000015168 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 93.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASNKTTLLHNMEDTENECSLKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDEHSADNTWEPEEN |
MASNKTTL...M....N..S.KVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTD...ADNTWEPEEN | |
Retrocopy | MASNKTTL-QKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTD---ADNTWEPEEN |
Parental | LDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGEL |
LDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGEL | |
Retrocopy | LDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGEL |
Parental | MFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
MFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ | |
Retrocopy | MFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 21 .80 RPM | 13 .57 RPM |
SRP017611_kidney | 21 .46 RPM | 8 .90 RPM |
SRP017611_liver | 7 .09 RPM | 3 .96 RPM |
SRP040447_lung | 12 .33 RPM | 14 .68 RPM |
SRP040447_skeletal_muscle | 7 .26 RPM | 6 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013843 | 22 retrocopies |
retro_chof_1128, retro_chof_1147, retro_chof_1156, retro_chof_1178, retro_chof_1210, retro_chof_1223, retro_chof_132, retro_chof_1569, retro_chof_1672, retro_chof_1779, retro_chof_1863, retro_chof_1962, retro_chof_222, retro_chof_2269, retro_chof_2347, retro_chof_2379, retro_chof_2435, retro_chof_2695, retro_chof_411, retro_chof_676, retro_chof_87, retro_chof_936,
|
Cavia porcellus | ENSCPOG00000015168 | 1 retrocopy |
retro_cpor_66 ,
|
Felis catus | ENSFCAG00000015224 | 6 retrocopies | |
Homo sapiens | ENSG00000122565 | 9 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014931 | 9 retrocopies | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Sorex araneus | ENSSARG00000008011 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies |