RetrogeneDB ID: | retro_fcat_1005 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:137036870..137037376(+) | ||
Located in intron of: | ENSFCAG00000014285 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000015224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.14 % |
Parental protein coverage: | 93.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | KKQNGKSKK-VEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQK |
KKQNGKSKK.VEEAEPEEF.VE.V....VVNGKVEYFL.WKGFTD.D.TWEPEENLD.PELIEA.L.SQK | |
Retrocopy | KKQNGKSKK<VEEAEPEEFIVERVQEQHVVNGKVEYFLRWKGFTDVDDTWEPEENLDSPELIEAVLSSQK |
Parental | AGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG-LDPERIIGATDSSGELMFLMKWKDSDE-AD |
AGKEKDGTKRKS.SD...D.S.S.KKRDA...PRGFAR..LDPER.IGATDSSGE..F....K..D..AD | |
Retrocopy | AGKEKDGTKRKSVSDGGCDGSNSEKKRDAVNRPRGFARS>LDPERGIGATDSSGE--FMFLVKWKDR<AD |
Parental | LVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
.VLAK.AN.KC..IVIAFYEER.T..SCPE.EAQ | |
Retrocopy | SVLAKQANVKCSHIVIAFYEERVTQNSCPEAEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .87 RPM |
SRP017611_liver | 0 .00 RPM | 21 .63 RPM |