RetrogeneDB ID: | retro_fcat_1215 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:139271213..139271573(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000027716 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN5 | ||
Ensembl ID: | ENSFCAG00000005871 | ||
Aliases: | None | ||
Description: | prefoldin subunit 5 [Source:HGNC Symbol;Acc:8869] |
Percent Identity: | 85. % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AQLKVVQTKYVEAKDCLNVLNKNNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFF |
AQ.KVVQTK.VEAKDCLN.LNKNNEGKELLVPLTS.M.VPGKLH.VEHVLIDVGTGYYV....ED.KDFF | |
Retrocopy | AQIKVVQTKCVEAKDCLNMLNKNNEGKELLVPLTSPMHVPGKLHNVEHVLIDVGTGYYVKNENEDDKDFF |
Parental | KRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGATQATAK |
KRKIDF.TKQMEK.QPALQEKHAMKQA.MEMM.QKIQQ.TALGAT.A.AK | |
Retrocopy | KRKIDFFTKQMEKMQPALQEKHAMKQALMEMMNQKIQQVTALGAT*AIAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 102 .44 RPM |
SRP017611_liver | 0 .00 RPM | 32 .05 RPM |