RetrogeneDB ID: | retro_fcat_1732 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E3:34730516..34730778(+) | ||
Located in intron of: | ENSFCAG00000014299 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRP19 | ||
Ensembl ID: | ENSFCAG00000025895 | ||
Aliases: | None | ||
Description: | signal recognition particle 19kDa [Source:HGNC Symbol;Acc:11300] |
Percent Identity: | 52.17 % |
Parental protein coverage: | 62.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DQDRFICIYPAYLNN-KKTIAEGRRIPISKAVE-NPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQY |
DQD.F.C..PAYLN..KKTIA......IS...E..P.A.E.QD.CS.....VFLEKN..YSREW.....Y | |
Retrocopy | DQDGFTCTWPAYLNK<KKTIAGRKQLTISNVIE<DPAAAEVQDACSVAAFHVFLEKNTIYSREWDCAL-Y |
Parental | RGRVRVQLKQEDGSLCLVQFPS |
RG..RVQL.Q..G...L...PS | |
Retrocopy | RGS-RVQLTQGEGIPRLTRLPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .21 RPM |
SRP017611_liver | 0 .00 RPM | 15 .16 RPM |