RetrogeneDB ID: | retro_ocun_1003 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 19:26320603..26320946(+) | ||
Located in intron of: | ENSOCUG00000000925 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRP19 | ||
Ensembl ID: | ENSOCUG00000015639 | ||
Aliases: | None | ||
Description: | signal recognition particle 19kDa [Source:HGNC Symbol;Acc:11300] |
Percent Identity: | 77.31 % |
Parental protein coverage: | 79.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | TIAEGRRI-PVSKAVE-NPTATEIQDVCSAVGLNVLLEKNKMYSREWNRDVQYKGRVRVQLKQEDGSLCL |
T....RR..P..KAVE.NPTATEIQDVCSAVG.NV.LEKNKMYSREWNRDVQ..GRV.VQLKQEDGSL.. | |
Retrocopy | TVRPSRRV>PMGKAVE<NPTATEIQDVCSAVGFNVFLEKNKMYSREWNRDVQFRGRVWVQLKQEDGSLSV |
Parental | LQF-PSRKSVMLYVAEMIPKLKTRTQKAGGGDPSLQQGE-GSKKGKGKK |
.QF.P..KSVMLY.AEMIPKLKTR.QKAG.GDPSLQQG...S.KGKGKK | |
Retrocopy | VQF<PTTKSVMLYAAEMIPKLKTRIQKAGAGDPSLQQGD<QSEKGKGKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .99 RPM | 14 .13 RPM |
SRP017611_kidney | 0 .30 RPM | 13 .28 RPM |
SRP017611_liver | 0 .92 RPM | 5 .63 RPM |