RetrogeneDB ID: | retro_ocun_1548 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | AAGW02083724:1798..2229(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023163 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRP19 | ||
Ensembl ID: | ENSOCUG00000015639 | ||
Aliases: | None | ||
Description: | signal recognition particle 19kDa [Source:HGNC Symbol;Acc:11300] |
Percent Identity: | 96.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MACAAARSPAEQDSRFICIYPAYLNNKKTIAEGRRIP-VSKAVENPTATEIQDVCSAVGLNVLLEKNKMY |
MACAAARSPAEQD.RFICIYPAYLNNKKTI.EGRRIP.VSKAVENPTATEIQDVCSAVGLNVLLEKNKMY | |
Retrocopy | MACAAARSPAEQD-RFICIYPAYLNNKKTITEGRRIP<VSKAVENPTATEIQDVCSAVGLNVLLEKNKMY |
Parental | SREWNRDVQYKGRVRVQLKQEDGSLCLLQFPSRKSVMLYVAEMIPKLKTRTQKAGGGDPSLQQGEGSKKG |
S.EWNRDVQYKGRVRVQLKQEDGSLCL.QFPSRKSVMLYVAEMIPKLKTRTQKAGGGDPSLQQGEGSKKG | |
Retrocopy | STEWNRDVQYKGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKAGGGDPSLQQGEGSKKG |
Parental | KGKKKK |
KGKKKK | |
Retrocopy | KGKKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .77 RPM | 14 .13 RPM |
SRP017611_kidney | 1 .32 RPM | 13 .28 RPM |
SRP017611_liver | 0 .54 RPM | 5 .63 RPM |