RetrogeneDB ID: | retro_ocun_729 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:143498773..143499063(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRP19 | ||
Ensembl ID: | ENSOCUG00000015639 | ||
Aliases: | None | ||
Description: | signal recognition particle 19kDa [Source:HGNC Symbol;Acc:11300] |
Percent Identity: | 59.6 % |
Parental protein coverage: | 66.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AARSPAEQDSRFICIYPAYLNNKKTIAEGRRIPVSKAVENPTATEIQDVCSAVGLNVLLE-KNKMYSREW |
A..S.A.QD.R.ICI...YLN.KKT..E.R.I...K..ENP.ATEI.D.C..VG.N..LE.KNKMYSRE. | |
Retrocopy | AKLSLANQD-RLICICCVYLNTKKTLTEWR*ISINKSIENPIATEIHDICLGVGHNAFLE<KNKMYSREQ |
Parental | NRDVQYKGR-VRVQLKQEDGSLCLLQFPS |
N.D.QY..R.V.V.LKQE.GSLCL...PS | |
Retrocopy | NHDIQYRNRGVWVGLKQEEGSLCLVELPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .28 RPM |
SRP017611_liver | 0 .00 RPM | 5 .63 RPM |