RetrogeneDB ID: | retro_mmul_1088 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:53444..53802(-) | ||
Located in intron of: | ENSMMUG00000011509 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRP19 | ||
Ensembl ID: | ENSMMUG00000000331 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.9 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | ACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSA-VGLNVFLEK-NKMYS |
ACAA..SPADQDRF.CIYP....NKKT..EGR..PISK.VENPTA.......S....L..FL.K...MYS | |
Retrocopy | ACAAVWSPADQDRFTCIYPVC*SNKKTTVEGR*NPISKSVENPTARGSRPMFSS<LDLMHFLRK<KRMYS |
Parental | REWNRDVQYRGRVRVQLKQE-DGSLCLVQFPSR-KSVMLYAAEMIPKLKTRTQK |
REWN.DV.Y.GRV..QL..E.DGSLCLV.FPS..KS..L.AA..IP.LKTRTQK | |
Retrocopy | REWNCDV*YKGRVWAQLRRE<DGSLCLVHFPSH>KSLTLCAA*TIPQLKTRTQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .90 RPM | 18 .82 RPM |
SRP007412_brain_prefrontal_cortex | 0 .32 RPM | 16 .66 RPM |
SRP007412_cerebellum | 1 .49 RPM | 13 .17 RPM |
SRP007412_heart | 0 .18 RPM | 7 .60 RPM |
SRP007412_kidney | 0 .12 RPM | 9 .27 RPM |
SRP007412_liver | 0 .12 RPM | 4 .43 RPM |
SRP007412_testis | 0 .19 RPM | 7 .24 RPM |