RetrogeneDB ID: | retro_fcat_1955 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:118611379..118611835(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000025372 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C9orf85 | ||
Ensembl ID: | ENSFCAG00000031942 | ||
Aliases: | None | ||
Description: | chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:28784] |
Percent Identity: | 66.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSSQKGNVARSRPQRHQN-TFSFKNDKFDKSIQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKK |
MSSQKGNVA..RPQ..QN.T.SFKNDKF.KS.QTKKINAKLH.G.CQ..KEVL.W..K.SKYK.LSKPKK | |
Retrocopy | MSSQKGNVAHPRPQLPQN>TYSFKNDKFAKSVQTKKINAKLHGGICQCHKEVLDWCAKHSKYKVLSKPKK |
Parental | CVKCLQKAVKDSYHIMCRPCACELEVCAKCGKKEDIVIPFNKEPEKTENPESNLRSNPRSCRRNEEESDD |
...CL.K..KDSYHIMCR...C..EVCAKC.KK.D.V....K.PE..EN.ES..RSN.R.C.R..E..DD | |
Retrocopy | YGTCLEKSAKDSYHIMCRLRGCAFEVCAKCRKKGDVVALLHKQPERAENTES-IRSNHR-CGRRNEQGDD |
Parental | DLDFDIDLDDT-KDNQGD |
DL.F..DLDDT.KDNQ.D | |
Retrocopy | DLHF--DLDDT<KDNQMD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 2 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .06 RPM |
SRP017611_liver | 0 .00 RPM | 1 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007254 | 1 retrocopy | |
Bos taurus | ENSBTAG00000006831 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001820 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001441 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000025848 | 2 retrocopies | |
Felis catus | ENSFCAG00000031942 | 1 retrocopy |
retro_fcat_1955 ,
|
Homo sapiens | ENSG00000155621 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024309 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018881 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008971 | 1 retrocopy | |
Mus musculus | ENSMUSG00000035171 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001023 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024578 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011302 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029745 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021018 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000027161 | 5 retrocopies | |
Sorex araneus | ENSSARG00000004523 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015556 | 6 retrocopies |