RetrogeneDB ID: | retro_cfam_2126 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:114891916..114892202(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C9orf85 | ||
Ensembl ID: | ENSCAFG00000001820 | ||
Aliases: | None | ||
Description: | chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:28784] |
Percent Identity: | 69.79 % |
Parental protein coverage: | 61.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VKYSKYKPLSKPKKCVKCLQKSVKDSYHIICRP-CACELEVCAKCGKKEDIVVPFNKEPEKTENPEINLH |
VK.SKY.P.SKP.K.VK.LQKSVKD.YHI.CR..CAC...VC.K.GKKEDIV..FNK..EK.EN...NL. | |
Retrocopy | VKGSKYEPFSKP*KSVKSLQKSVKDAYHIVCRL>CACGFQVCTKHGKKEDIVALFNKQSEKAENTGSNLR |
Parental | SNHRSCRRNEESDDDLDFDIDLDDPK |
SNHRSCRRNE.SDDDL.FD.D.DD.K | |
Retrocopy | SNHRSCRRNEDSDDDLEFDTD*DDTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 1 .81 RPM |
SRP017611_brain | 0 .00 RPM | 1 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .16 RPM |
SRP017611_liver | 0 .00 RPM | 2 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007254 | 1 retrocopy | |
Bos taurus | ENSBTAG00000006831 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001820 | 1 retrocopy |
retro_cfam_2126 ,
|
Callithrix jacchus | ENSCJAG00000001441 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000025848 | 2 retrocopies | |
Felis catus | ENSFCAG00000031942 | 1 retrocopy | |
Homo sapiens | ENSG00000155621 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024309 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018881 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008971 | 1 retrocopy | |
Mus musculus | ENSMUSG00000035171 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001023 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024578 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011302 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029745 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021018 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000027161 | 5 retrocopies | |
Sorex araneus | ENSSARG00000004523 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015556 | 6 retrocopies |