RetrogeneDB ID: | retro_pabe_1996 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:56578271..56578637(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000029745 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72. % |
Parental protein coverage: | 79.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TIKLQKINAKLHDGVCQRCKEVLEWRVKYSKYKPLS-KPKKCVKCLQKTVKDSYHIMCRPCACELEVCTK |
.....KINAKL.D.VCQR.KEVLE.RVKY.KYKPLS.KP.KCVKCL.KTVKDSYH.MCRPCACELEVCTK | |
Retrocopy | SVQTKKINAKLPDIVCQRYKEVLECRVKYKKYKPLS<KPNKCVKCL*KTVKDSYHTMCRPCACELEVCTK |
Parental | CGKKEDIVIPLNKETEKIEH-TENNLSSNHRRSCRRNEESDDDLDFDIDLEDTGG |
CG.KEDIVI...KE.E.......N..S...RRSC.RNEE.DD.LDFD.DLEDTGG | |
Retrocopy | CGRKEDIVILFSKEPEETKY>EDNLSSNH-RRSCGRNEERDDNLDFDVDLEDTGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .28 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .61 RPM |
SRP007412_heart | 0 .15 RPM | 0 .84 RPM |
SRP007412_kidney | 0 .10 RPM | 1 .23 RPM |
SRP007412_liver | 0 .00 RPM | 0 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2104 |
Pan troglodytes | retro_ptro_1543 |
Macaca mulatta | retro_mmul_988 |
Callithrix jacchus | retro_cjac_1283 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007254 | 1 retrocopy | |
Bos taurus | ENSBTAG00000006831 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001820 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001441 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000025848 | 2 retrocopies | |
Felis catus | ENSFCAG00000031942 | 1 retrocopy | |
Homo sapiens | ENSG00000155621 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024309 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018881 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008971 | 1 retrocopy | |
Mus musculus | ENSMUSG00000035171 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001023 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024578 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011302 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029745 | 2 retrocopies |
retro_pabe_1996 , retro_pabe_2397,
|
Pan troglodytes | ENSPTRG00000021018 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000027161 | 5 retrocopies | |
Sorex araneus | ENSSARG00000004523 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015556 | 6 retrocopies |