RetrogeneDB ID: | retro_mluc_2449 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430430:132522..132894(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C9ORF85 | ||
Ensembl ID: | ENSMLUG00000024309 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.13 % |
Parental protein coverage: | 77.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSSQRGNVARSRPQRHQNTFSFKNDKFDKTVQTKKINTKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKKC |
MSSQRGNVA....QRHQN.F..KN.KFDK.VQTKKINTKL..G....CK...EW.VKYSK.KPL.KPK.. | |
Retrocopy | MSSQRGNVAYPMIQRHQNMFRLKNGKFDKSVQTKKINTKLYAGIY*YCKAIFEWCVKYSKCKPLLKPKN* |
Parental | VKCLQKTVKDSYHIICRPCACELEVCAKCGKKEDIVTPFNKEP-EKTENIENNP |
.KCL.K.VKDSYHI.CRPC.CELEV..KCGK.EDIVTP.N.....KT..I...P | |
Retrocopy | AKCLPKLVKDSYHIMCRPCICELEVFTKCGKTEDIVTPINNQKRQKTLKIIHIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007254 | 1 retrocopy | |
Bos taurus | ENSBTAG00000006831 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001820 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001441 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000025848 | 2 retrocopies | |
Felis catus | ENSFCAG00000031942 | 1 retrocopy | |
Homo sapiens | ENSG00000155621 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024309 | 2 retrocopies |
retro_mluc_2449 , retro_mluc_2526,
|
Macaca mulatta | ENSMMUG00000018881 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008971 | 1 retrocopy | |
Mus musculus | ENSMUSG00000035171 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001023 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024578 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011302 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029745 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021018 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000027161 | 5 retrocopies | |
Sorex araneus | ENSSARG00000004523 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015556 | 6 retrocopies |