RetrogeneDB ID:

retro_tbel_200

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_1437:269427..269745(-)
Located in intron of:ENSTBEG00000015896
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C9orf85
Ensembl ID:ENSTBEG00000015556
Aliases:None
Description:chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:28784]


Retrocopy-Parental alignment summary:






>retro_tbel_200
ATGAGCTCCCAGAAAGGCAATGTGGCTCATTCCAGGCCTCAGAAGCACCAGAATACATTTAGCTCTAAAACTGACAAGTT
TTATAAGAGTGTTTATACCAAGAAAATTAATCCAAAGCTTCCTAATGGAGTATGTCAGCGCTGTAAAGAAGTTCTTGAAT
GGTGTGTAAAATACAGCAAATAGAAACTGTGATCAAAACCTAAAAAATGTGTTAAATGCTTACAGAAGACAGTGAAGGAG
TCTTACCATATAATGTGTAGGCCATGTGCCTGTGAACTTGAAGTTTATGCAAAATGTGGAAATAAAGAAGAAATTGTT

ORF - retro_tbel_200 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.96 %
Parental protein coverage: 99.07 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSTQKGNVARSRPQKHQNTFSFKNDKFDKSVHTKKINAKLHDGVCQHCKEVLEWRVKYSKYKPLSKPKKC
MS.QKGNVA.SRPQKHQNTFS.K.DKF.KSV.TKKIN.KL..GVCQ.CKEVLEW.VKYSK.K..SKPKKC
RetrocopyMSSQKGNVAHSRPQKHQNTFSSKTDKFYKSVYTKKINPKLPNGVCQRCKEVLEWCVKYSK*KL*SKPKKC
ParentalVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEEIV
VKCLQKTVK.SYHIMCRPCACELEV.AKCG.KEEIV
RetrocopyVKCLQKTVKESYHIMCRPCACELEVYAKCGNKEEIV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_200 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_200 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000072541 retrocopy
Bos taurus ENSBTAG000000068311 retrocopy
Canis familiaris ENSCAFG000000018201 retrocopy
Callithrix jacchus ENSCJAG000000014412 retrocopies
Cavia porcellus ENSCPOG000000258482 retrocopies
Felis catus ENSFCAG000000319421 retrocopy
Homo sapiens ENSG000001556212 retrocopies
Myotis lucifugus ENSMLUG000000243092 retrocopies
Macaca mulatta ENSMMUG000000188812 retrocopies
Mustela putorius furoENSMPUG000000089711 retrocopy
Mus musculus ENSMUSG000000351716 retrocopies
Nomascus leucogenys ENSNLEG000000010231 retrocopy
Oryctolagus cuniculus ENSOCUG000000245782 retrocopies
Otolemur garnettii ENSOGAG000000113021 retrocopy
Pongo abelii ENSPPYG000000297452 retrocopies
Pan troglodytes ENSPTRG000000210182 retrocopies
Rattus norvegicus ENSRNOG000000271615 retrocopies
Sorex araneus ENSSARG000000045231 retrocopy
Tupaia belangeri ENSTBEG00000015556 6 retrocopies



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