Parental gene: | 1110059E24Rik, ENSMUSG00000035171 |
| Aliases: | None |
| Description: | RIKEN cDNA 1110059E24 gene [Source:MGI Symbol;Acc:MGI:1913456] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 19:21581201..21652976(-) |
>ENSMUSG00000035171
ATGAGTTCCCAGAAAGGCAACGTGACTCGGTCCCGGCCTCAGAAGCACCAGAATACGTTCACCTTCAAAAATGACAAGTT
TGATAAGAGTGTTCAGACCAAGAAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGT
GGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTGTGTTAAATGTTTACAAAAGACAGTAAAGGAC
TCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTAT
TCCGTTTAATAAAGAACCAGACGCTCCAGAAAACACTGAAAATGAAGGTTCTGGCCATAGAAGACGCTGCGGACGGAAGG
AAGACAGTGATGAGGACTTAGACGCTGAGTCTGACTCGGATGGCGAGGATGGAGACACTCAGGCCTGA
ATGAGTTCCCAGAAAGGCAACGTGACTCGGTCCCGGCCTCAGAAGCACCAGAATACGTTCACCTTCAAAAATGACAAGTT
TGATAAGAGTGTTCAGACCAAGAAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGT
GGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTGTGTTAAATGTTTACAAAAGACAGTAAAGGAC
TCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTAT
TCCGTTTAATAAAGAACCAGACGCTCCAGAAAACACTGAAAATGAAGGTTCTGGCCATAGAAGACGCTGCGGACGGAAGG
AAGACAGTGATGAGGACTTAGACGCTGAGTCTGACTCGGATGGCGAGGATGGAGACACTCAGGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 13 .64 RPM |
| SRP007412_cerebellum | 15 .46 RPM |
| SRP007412_heart | 5 .45 RPM |
| SRP007412_kidney | 10 .07 RPM |
| SRP007412_liver | 17 .20 RPM |
| SRP007412_testis | 9 .15 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000007254 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000006831 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000001820 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000001441 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000025848 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000031942 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000155621 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000024309 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000018881 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000008971 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001023 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000024578 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000011302 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000029745 | possible_ortholog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000021018 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000027161 | ortholog_one2one | 5 retrogenes | |
| Sorex araneus | ENSSARG00000004523 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000015556 | ortholog_one2one | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_1049 | 78.71 | 99.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_2254 | 79.75 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_2286 | 87.74 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_2781 | 63.39 | 70.97 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_2941 | 70.79 | 57.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmus_3698 | 55.97 | 99.35 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000035171 retrocopies