RetrogeneDB ID: | retro_fcat_299 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:216171151..216171706(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002277 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MPVDLSKWSGPLS-LQEVDERPQHPLQVKYTGAEVD-ELGKVLTPTQVKNRPTSIAWDGLDPGKLYTLVM |
M..DLSKWS.P...LQ.V.ERP.HPLQVK...A.VD.ELGKVLTPT.VKN.PT..AWDGL.PG.L.TLV. | |
Retrocopy | MLMDLSKWSWPVT<LQQVEERPEHPLQVKIFRAQVD>ELGKVLTPTRVKNQPTGLAWDGLNPGELHTLVV |
Parental | TDPDAPSRKDPK-YREWHHFLVVNMKGNDISSGTVL-SDYVGSGPPKGTGLHRYVWLVYEQNGPLKCDEP |
.DPDAPSRKDPK.....H..LV...KG..ISSGT.L.SDYV.SGPPK.TGL...VWLV...NGPL.C.EP | |
Retrocopy | IDPDAPSRKDPK>TERHHFLLV-SLKGSYISSGTIL<SDYVASGPPKATGLRH*VWLVFKYNGPLACEEP |
Parental | ILSNRSGDHRGKFKVASFRKKYELGPPVAGTCYQAEWDDYVPKLYEQLSGK |
ILSN.SGD.RG.FKV.SF.KK.ELGPP.AGTCYQAEWDD..PK...Q..GK | |
Retrocopy | ILSNQSGDGRGEFKVSSFCKK-ELGPPLAGTCYQAEWDDQLPKFCKQMPGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 289 .46 RPM |
SRP017611_kidney | 0 .00 RPM | 418 .72 RPM |
SRP017611_liver | 0 .00 RPM | 101 .39 RPM |