RetrogeneDB ID: | retro_rnor_46 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:233361094..233361658(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000008667 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pebp1 | ||
Ensembl ID: | ENSRNOG00000001136 | ||
Aliases: | Pebp1, HCNP, Pbp, Rkip | ||
Description: | Phosphatidylethanolamine-binding protein 1 Hippocampal cholinergic neurostimulating peptide [Source:UniProtKB/Swiss-Prot;Acc:P31044] |
Percent Identity: | 79.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAADISQWAGPLSLQEVDEPPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTD |
M.ADI..WAGPLSLQ.VDE.PQH.LRV.Y.G..V.ELG.VLTPTQV.NRPSSI.WDGLDPGKLYTL.LTD | |
Retrocopy | MPADITVWAGPLSLQDVDEQPQHLLRVTYAGAEVSELGQVLTPTQVKNRPSSITWDGLDPGKLYTLILTD |
Parental | PDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSN |
PDAPSRK.P..REWHHFLVVNMKGNDISSG.VLS.YVGSGPPK.TGLHRYVWLVY.Q..PL.CDEPIL.N | |
Retrocopy | PDAPSRKEPIYREWHHFLVVNMKGNDISSGKVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLKCDEPILTN |
Parental | KSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQLAGK |
.SG..RGKFK...FRKKYHLGAPVAGTC.QAEWD..VPKL..QL.GK | |
Retrocopy | RSGNQRGKFKAAAFRKKYHLGAPVAGTCYQAEWDSYVPKLYKQLSGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 218 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 275 .85 RPM |
SRP017611_liver | 0 .00 RPM | 184 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_138 |