RetrogeneDB ID: | retro_pabe_241 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:51706152..51706645(+) | ||
Located in intron of: | ENSPPYG00000000380 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PEBP1 | ||
Ensembl ID: | ENSPPYG00000005011 | ||
Aliases: | None | ||
Description: | Phosphatidylethanolamine-binding protein 1 Hippocampal cholinergic neurostimulating peptide [Source:UniProtKB/Swiss-Prot;Acc:Q5R4R0] |
Percent Identity: | 70. % |
Parental protein coverage: | 62.55 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FPGQCAELSVSSLPPAPGLP-RHSRLHPLLGFAMPVDLSKWSGPLSLQEVDERPQHPLHVTYAGAAVDEL |
FPG...E...S..P..P.L...HS.L..........DLSK.S.PLSLQEVD..PQH.LHVTYA.AAVDEL | |
Retrocopy | FPG*FSEAAKS--PLRPRLA*WHSQLRAPFLRSHAKDLSKRSRPLSLQEVDGQPQHSLHVTYARAAVDEL |
Parental | GKVLTPTQVKNRPTSISWEGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLS-DY |
GKVLTPT.V.NRPTSISW..LDS.KLYTLVLTDPDAP.RK.P.Y.EW.HFLVVNMKGND.SSG.V.S..Y | |
Retrocopy | GKVLTPT*V-NRPTSISWDDLDSRKLYTLVLTDPDAPGRKKPQYSEWRHFLVVNMKGNDVSSGPVFS<HY |
Parental | VGS-GPPKGTGLHRYVWLVYEQDRPLKCDE |
VGS.GPP.GTGLHRYVWLVY.QD..LKCDE | |
Retrocopy | VGS<GPPEGTGLHRYVWLVYKQDWLLKCDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 583 .10 RPM |
SRP007412_cerebellum | 0 .00 RPM | 564 .47 RPM |
SRP007412_heart | 0 .00 RPM | 255 .07 RPM |
SRP007412_kidney | 0 .07 RPM | 522 .13 RPM |
SRP007412_liver | 0 .09 RPM | 418 .63 RPM |