RetrogeneDB ID: | retro_ocun_1900 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:71806965..71807526(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021400 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PEBP1 | ||
Ensembl ID: | ENSOCUG00000008395 | ||
Aliases: | PEBP1, PEBP | ||
Description: | phosphatidylethanolamine binding protein 1 (PEBP1), mRNA [Source:RefSeq mRNA;Acc:NM_001082143] |
Percent Identity: | 97.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPVDLSKWSGPLSLQEVEERPQHPLQVTYSGVALDELGQVLTPTQQVKNRPTSIVWDGLDPDKLYTLVLT |
MPVDLSKWSGPLSLQEVEERPQHPLQVTYSGVALDELGQVLTPTQ.VKNRPTSI.W.GLDPDKLYTLVLT | |
Retrocopy | MPVDLSKWSGPLSLQEVEERPQHPLQVTYSGVALDELGQVLTPTQ-VKNRPTSIAWNGLDPDKLYTLVLT |
Parental | DPDAPSRKDPKYREWHHFLVVNMKGGNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDGPLKCDEPVLS |
DPDAPSRKDPKYREWHHFLVVNMKGGNISSGTVLSDY.GSGPPKGTGLHRYVWL.YEQDGPLKCDEPVLS | |
Retrocopy | DPDAPSRKDPKYREWHHFLVVNMKGGNISSGTVLSDYLGSGPPKGTGLHRYVWLIYEQDGPLKCDEPVLS |
Parental | NRSGDHRGKFKVANFRKKYHLGTPVAGSCYQAEWDDYVPKLYEQLSGK |
NRSGDHRGKFKVANFRKKYHLGTPVAGSCYQAEWDDYVPKLYEQLSGK | |
Retrocopy | NRSGDHRGKFKVANFRKKYHLGTPVAGSCYQAEWDDYVPKLYEQLSGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 26 .66 RPM | 344 .15 RPM |
SRP017611_kidney | 19 .06 RPM | 154 .16 RPM |
SRP017611_liver | 3 .24 RPM | 44 .63 RPM |