RetrogeneDB ID: | retro_rnor_1223 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 16:36471912..36472227(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000021849 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pebp1 | ||
Ensembl ID: | ENSRNOG00000001136 | ||
Aliases: | Pebp1, HCNP, Pbp, Rkip | ||
Description: | Phosphatidylethanolamine-binding protein 1 Hippocampal cholinergic neurostimulating peptide [Source:UniProtKB/Swiss-Prot;Acc:P31044] |
Percent Identity: | 84.76 % |
Parental protein coverage: | 56.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSN |
P..PSRKDPKFREWHHFLVVNMKGNDISSGTVLS.YVGSGPP..TGLH.Y.WLVYEQEQPL.CDE.ILSN | |
Retrocopy | PHRPSRKDPKFREWHHFLVVNMKGNDISSGTVLSDYVGSGPPSGTGLHHYIWLVYEQEQPLSCDESILSN |
Parental | KSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDD |
K.G.N.GKFK.E.FRKKYHLGAPVA.TC.QAEWDD | |
Retrocopy | KPGKNQGKFKAETFRKKYHLGAPVASTCYQAEWDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 218 .35 RPM |
SRP017611_kidney | 0 .14 RPM | 275 .85 RPM |
SRP017611_liver | 0 .00 RPM | 184 .63 RPM |